Baylor College of Medicine Trace Viewer
by K. James Durbin
Copyright© 1997-1999 K. James Durbin
and Baylor College of Medicine
Human Genome Sequencing Center
All rights reserved
!!! !!! Now includes source code. !!! !!!
Read license and download a .tar.gz archive of the class files.
The main features of BCM Trace Viewer are:
- Free for non-profit and academic use. Commercial licenses available.
- Displays quality values as numbers or as a quality graph.
- Quality values/graph can be colored to match bases or on a "temperature" scale.
- Displays location of base calls
- Can turn on/off individual traces
- Can display trace as connected lines or individual points.
- Can scale trace both horizontally and vertically.
- Window is resizable (can take advantage of whatever resolution is available)
- Written in Java so it's portable across a variety of operating
systems and machines.
- Runs as a stand alone application (with java interpreter)
- Runs as an web page embeddable applet.
- Reads .scf files for trace data (ABI files will be added in the future)
- Reads .exp (Xgap) files for quality (.qual support to be added).
README for TraceViewer.
For additional information contact James Durbin at
kdurbin@bcm.tmc.edu